The Master Program of Faculty of Engineering Universitas Indonesia was opened in 1992 with four study programs: Civil Engineering, Mechanical Engineering, Electrical Engineering and Metallurgy Engineering. In 2000, the faculty opened the Master Program for Chemical Engineering (from Gas Engineering Study Program in Metallurgy Engineering Department), Industrial Engineering (from Industrial Management Study Program in Mechanical Engineering Department) and Architecture.
By the end of the year, the Optoelectronic and Laser Application study program joined the Master Program of Faculty of Engineering Universitas Indonesia. Each Study Program in the Master Program is headed by a Head of Study Program held in ex-officio by the Head of Department. Each Department have one or more specialization to give a more in-depth and specific engineering knowledge to each student of said study program.
FTUI Doctoral program was officially opened in 2000 with the opening of the Civil Engineering and Electrical Engineering Doctoral program followed by the emersion of the Opto-electro technique and Laser Application study program into the Postgraduate Program of FTUI. The Mechanical Engineering study program was officially opened in 2006 while the Metallurgy & Material Engineering and Chemical Engineering followed in 2007. And In 2009, respectively Department of Architecture opened the Architecture Doctoral Program. In 2011, the Opto-electro technique and Laser Application was closed and emerged into the Electrical Engineering study program. Each Doctoral study program is headed by the Head of Study Program which is held ex-officio by the Head of Department in the Faculty of Engineering UI. The Doctoral study programs have one or more focus subjects to give a more specific knowledge on engineering field to all students of the program.